Some of those network links are labelled "PCIe" or "SATA", and some are labelled "Ethernet" or "DisplayPort", but they're all high-speed serial links. A PCIe lane is only 8Gbit, comparable to 10Gbit ethernet.
This means that your computer "backplane" design can be de-constrained; you don't have to draw a hard distinction between elements in the same case and those in the case of the machine next to you in the rack.
A rotating disk is roughly able to saturate a 1Gb ethernet link. Maybe we should just go full SAN and put Ethernet connectors on the drives.