We've had our own datacenters for a very long time; this project just represents moving "blob storage" into our own datacenter rather than just metadata.
> Mass storage with Amazon is much cheaper
As the article says, in Dropbox's particular case this is very untrue. Although I agree with your general point that, absent having something like Dropbox's scale/resources, just using S3 is probably your best bet.
> Can anyone convince me that this move by Dropbox isn't going to end very badly for them?
So, wrt "ending badly", the project has already happened. It's more efficient, faster, more flexible, etc. So I can say with some confidence it won't end badly. :-)