The contracts that Boston Dynamic had with DoD expired in March 2015 [2]. My guess (BIG UNEDUCATED GUESS) is that the DoD doesn't take too kindly to its contractors not renewing its contracts and these military contracts contradict the corporate culture of Google. What's interesting is that they sold Boston Dynamic exactly a year after the DoD contract expired (donning conspiracy hat).
[1] http://www.nytimes.com/2013/12/14/technology/google-adds-to-... [2] http://upstart.bizjournals.com/companies/innovation/2015/01/...