In the past three years, the collegian website has added a lot of great features, and the design has improved considerably. It looks like they're still stuck on an old ASP backend, but the students responsible for the front page have been moving in the right direction. Unfortunately, its a pretty huge undertaking for unpaid (or close) full time students to replace a decent working site with a decade of archives with with a Rails app.
In many ways, the Collegian is a representative good college daily - there are many in much deeper trouble for failing to grasp the basics of good journalism, not the basics of web 2.0. (Disclosure: Former Collegian photo staff)