I was working on a similar concept (GPU-accelerated Hadoop MapReduce) at the time, and everyone I talked to in the Valley (and believe me, I knocked on a lot of doors) was perfectly happy with their Hadoop jobs running overnight or in an hour instead of instantaneously. It also amazed me how many people were using Hadoop only for the distributed storage.
Maybe data scientists love taking coffee breaks...
In the end, I scrapped the project because nobody wanted it -- everybody said they were only doing I/O bound work, which my solution didn't really accelerate.
Interestingly enough, I talked to people from Fusion.io (data center PCI-E SSDs) who mentioned that everybody told them that they didn't need Fusion because they were only doing compute bound work.
A YC company, BigCalc, was trying to do a similar thing with accelerating R (by rewriting library routines in highly-optimized pure C), targeting hedge funds, but suffered a similar fate as my map reduce project.
Shockingly, people just don't need speed.