Gnuplot is still used quite a lot in my area. You need to work more to make something aesthetically pleasing, but it's generally a better fit to plotting large amounts of data coming from another code. I've also been quite badly burnt by Matplotlib scripts no longer producing the same plot with changes in the library. Gnuplot version 5+ is nicer to use and has some pretty powerful features.
This blog has been a good cookbook reference for how to use it in a modern way: http://www.gnuplotting.org/