"Each tool does just one thing well" doesn't mean "just one tool does one thing". In fact, ETDJOTW means that
interoperable alternative tools -- loose coupling -- is more readily supported. So that, say, you can transparently migrate from unsecured rsh to secured ssh. Actually: you can even gain capabilities, since rsh is (misfeature) limited to the 512 low-numbered ports, and hence, a maximum of 512 outbound connections. SSH has no such limitation, and can scale far higher as a management tool.
(That bug, and option, was what finally convinced one old-time shop to swap in SSH for RSH for such tasks, after I identified the problem and the solution.)
A better example would be "one tools" that do many things. Rob Pike suggested Perl, though IMO that's kind of foolish: Perl is Yet Another Programming Language, and programming languages, rather by design, tend to do multiple things (not always, or not always easily: see sed as an example of both caveats -- text replacement or branching code).
Other examples are generally nexus points of complex interactions. Editors (most especially Emacs). Email management (communications protocols, format protocols, ties to DNS, anti-spam, filtering, remote-access (POP and IMAP), extensions, authentication (at various levels), encryption (at various levels). The problem domain is complex, so the tools are complex.
The tool you're very likely using right now to read this would be another case in point: the Web browser. Not just for CERN any more.