Edit: I took a look at your list and don't see any pattern in those stories. Some belong on HN and indeed got a lot of time on the front page. Others clearly don't belong on HN. In a few cases moderators intervened to penalize the story or turn penalties off, but in a solid majority moderators didn't intervene at all. In a few cases a bunch of points were dropped by the anti-voting ring software so the 'real' score wasn't as high as it seemed.
To me all this shows, and the reason I described it as 'completely wrong', is that you can't reconstruct what's going on from timestamps, point totals, and story rank. There's simply too much data that isn't public. I know that's frustrating to the large section of HN's userbase who love to know what's going on and figure things out. But I don't believe making it all public would be helpful, so here's the balance we've arrived at over the years: we make public the the principles of how the system works, including moderator intervention, and we answer specific questions about specific cases.