Commodore failed to invest in R&D so by the time the AGA Amiga's came out they had to outsource the fabrication and it ballooned their costs.
Apple might have never been able to get to C64 prices but they sure could have dropped enough to get well clear of IBM. Regardless, its was Commodore's market share to lose not Apple's.
An inferior sound chip
Bigger pallets but with fewer colors per cell
Tiny sprites
If anything the custom chips of the C64 and the Atari 8-bit line are about equal, each taking different trade offs.
Heck, Commodore's sequel to the C64 known as the C128 coupled the 8502 (better 6510 which was a better 6502) with another 8-bit chip in the Z80. They built a Frankenstein and not a natural upgrade.
1) a curse on all those that prevented IBM from using the 68000. Sure, use the 68000 in something that's supposed to act like a 370 but not in the PC where it would have saved us all a whole lot of crap.
If I had to guess, the Mac was more expensive than a PC simply because it did more (e.g. graphics and sound).