What about a permeable membrane? I.e. an organism absorbing nutrients through a wall that still maintains structure?
By what reasoning would it not be a single membrane in two dimensions, but it would be in three dimensions? As far as I can tell your only support/reasoning is found when you write "IMHO"...
In 2 dimensions, the membrane is essentially a line (or a linear sequence of objects) - if that line is interrupted in one space to let stuff through, then it's not connected anymore, it's two separate lines with nothing linking them, it's broken with no possibility to connect "around the hole" because any connection around the hole requires the third dimension, and any connection through the hole closes that hole.