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If only I could figure out a way of scribbling with the iPadPro pen and get it into org mode.

I wouldn’t bother. I’ve always found it easier and better (for reinforcement) to transcribe my notes/drawings into org-mode.

throw in org-roam and you've got a real solid zettelkasten

https://github.com/jethrokuan/org-roam

I want to copy paste screenshots and images. Ideally it should store the screenshot in a folder and automatically link to it. Do you use anything like that?