I do still feel though, that they are a legacy of when all these fancy old Greek-reading scientists could flex their knowledge of unfamiliar symbols and choose to make it hard for people who couldn't grasp it immediately. ("Now to simplify the equation let's introduce the zeta function into this expression!")
Lowercase Xi and Zeta were the worst. Never mind that they were the rarest and always most complex (visually) of letters to be used -- but also always horribly written by students/teachers, and made it even more incomprehensible.
I have similar feelings about the bra/ket notations in QM.