I'm glad for the new Pinboard integration.
My regular flow is to have everything (RSS for blogs with long posts and RSS for simple alert/notification blogs) in Google Reader and filter through it there, only viewing everything once. Anything longer than a paragraph in there goes to Instapaper, to really read later.
I sent random links and website I want to save to Instapaper as well and was moving them to Pinboard manually on the website, but this will definitely save me time.