I don't understand how this follows, having fundamental patents should lead to the breakup of basically every large US company by the government by this logic.
AT&T licensed the transistor to a number of companies, so even if the Bell system didn't have a use for the device (it did in fact, in order to reduce the size of telephone exchanges) so they derived revenue from the invention. How this translates into a 'disaster' for the Bell System is unclear since it was eventually broken up because of the decision that long distance and local service should be different markets long after the patent on the transistor had expired.