For example, the majority of the total value comes from the few outliers (AirBnb, Heroku, DropBox) and the other 80/90/95% of companies contribute relatively little to the total valuation.
So let's say they still own 6% of these outliers. Great! That's still worth a lot. But how much do they still own? Have their shares been diluted? Did they have to issue new shares due to further financing? Has that 6% turned into 3% or 1.5%?
I'm not an expert but it's quite possible that their initial 6% has been diluted.
I think the picture looks good, overall, for YC from an investment standpoint. I think avg. value is not a great metric by which to value the "average" YC company since my guess is that the majority of the value is on the top end.