OP here. I loved most of those, I'd add DNA Lounge (though it seems based on the selection you're not into electronic music :) ). All of those are fond memories of some nice shows. Still was hard to justify a 1h (one way!) drive. :(
An to me, the essential part is the local scene/culture. I didn't see too much of it in SF, maybe I didn't stick for long enough (my brutal commute to MTV took away my will to live and I had to move).