Apple have realised that the only way of replacing this (and eventually killing SMS) is to provide a messaging service which is inherently invisible or 'passive' from a UX point of view. Yes, it is tied into iOS, but the critical thing to consider is that users are required to put in zero effort to send an iMessage.
With this in mind, I don't see how Facebook Messenger is any different to the likes of [insert free web messaging service here], admittedly with a lot more users.