> It has not been proven that these civilizations only had stone tools
It hasn't been proven that space aliens didn't create the masonry walls, either. (Yes, I've seen TV shows arguing that case.)
But archaeologists have shown that rocks can be shaped accurately in the manner of those walls by just banging them together. There is also the evidence of partially shaped rocks left behind.
There is no evidence of any other method.
I've been to Chichén-Itzá and have looked at the structures from an engineer's point of view, as I am a mechanical engineer. They are solidly built, massive, and well built. The scale is impressive. Very impressive. But the sophistication does not extend past the corbelled vault. They did not use an arch or a dome.
https://www.maya-archaeology.org/pre-Columbian_Mayan_temples...
The Mayan script has been shown to be phonetic, so they certainly had a solid writing system. But, sadly, we know very little about what they wrote about, since the Spanish burned their books.
I never called them primitive.