In addtion, if the autopilot or flight control system goes from a fully 'in the loop' mode to a 'direct mode' where input=output (the transition possibly being caused by faulty airpseed sensors in this case), the automatic flight control mode has no more authority to interrupt pilot command.
In situations like you describe where two 'free' (no force feedback in relation to control surface force) joystics are used, it is better to have a 'pilot in control' switch otherwise you could get situations where an inexperienced pilot would panic and force his joystick to an unsafe position, overriding the more experienced pilot.
See the following link for more info: http://msquair.wordpress.com/2011/09/16/pilots-in-the-loop-a...