What is the best way to mitigate the effects? I guess nothing for long distance since the radio waves need to bounce off the atmosphere, but what about for more local/direct line of sight?
That being said, if a geomagnetic storm takes out fiber laid on the bottom of the ocean we're probably all going to be needing new chromosomes shortly anyhow.
Higher frequency line-of-sight radios should not be affected. I did see that the extra noise can affect GPS.