Ilya and Mira probably didn’t know and might have discovered it recently and raised it with the board, hence the promotion. Note: both have Eastern-European ties, so if the application is in Ukraine, they could have strong feelings about it. Greg co-signed or knew and didn’t tell.
Alternatively, Elon found about it through StarLink and wanted to get revenge.
Alternatively, it could be a case where there was an option, Sam refused on ethical grounds without telling the board; they thought what is happening in Ukraine (or Gaza—Sam’s bio is a single Star of David, uncharacteristically short) justified the intervention. They confronted him, and he lied — or couldn’t tell because he was under a sworn statement to defend military secrets.
Either way, it explains the secrecy.