Potential infinity is the notion of infinity that is e.g. used in calculus. Potential infinities are compared by rates of growth relative to some common quantity, while actual infinities are compared by the possibility of defining a surjective mapping of objects in one to objects in the other (which is treated as ≤).
So when we talk about a universe that may be "infinite" in size, do we talk about a "potential" or an "actual" infinity?
I think it's clearly the former. If we talk about the size of the universe, we seem to talk about a geometric volume.
Now think of two "infinitely" tall towers standing on the ground. Tower A has a cross section of 100m², while tower B has 200m². Assume that the cross section of tower A has rectangular shape and of tower B square shape, such that you could fit exactly two of tower A into tower B if the latter was hollow.
This suggests a clear meaning in which tower B has "twice as much" volume as tower A, even though both have "infinite" volume. You can literally fill tower B exactly with two towers A. Here "twice as much" just means that as you go higher, the volume of tower B increases twice as fast as for tower A. Which is the rate-of-growth size-comparison from potential infinity.
But for actual infinity you can't say tower B has twice as much volume. You are forced to assume their volume is the same. But you don't even know whether their volume is "countably" or "uncountably" infinite, since you don't know whether space-time is quantized (countable) or continuous (uncountable). But that doesn't even matter for comparing the volume of the two towers:
It's not sensible to say the towers would gain volume by switching from a discrete universe to a continuous universe. Discrete vs continuous is only about how far space can be divided, which is independent of its volume. Otherwise we also would have to say that 1m³ in a continuous universe is more volume than 1000m³ in a discrete universe. Which would be plain wrong, 1m³ is less volume than 1000m³, no matter what the microstructure of space is like.
And if we say the universe is infinitely large, we apparently just talk about its volume (or hypervolume of space-time etc). Which would e.g. mean that an infinite universe with less dimensions would literally fit inside a universe with more dimensions, but not the other way round. (Assuming the physical laws are otherwise the same.)
So, it seems clear that an "infinite universe" assumes the notion of potential infinity, not of actual infinity.
I don't know anything about the supposed infinities present in a hydrogen atom, but I would guess that those probably are potential infinities, too. Which would suggest that the notion of an actual infinity is not backed by physics of the real world.