Realistically, though, transportation fuels have two sets of criteria for viability - the net energy produced, yes, but also then everything that makes a transportation fuel useable: density, transportability, safety, ease of loading, ease of getting the energy out, etc. They’re really closer to a battery than an energy source: how much energy did we put into this system, and how much can we get back out. You want that ratio to be as close to 100% as possible, but the fact that it takes more energy to produce than what you get back doesn’t automatically make it a bad transportation energy source if it has a variety of other useful factors.
Granted that Corn generally is particularly bad for this (I once heard a joke that the only thing corn was especially good for producing was lobbyists), but biofuels generally can still be viable even if the energy net is negative if they meet our other needs.
There are a few breakthroughs that the industry wants:
(1) biodiesel production products large amounts of glycerine since the biodiesel process basically breaks off the three hydrocarbon chains attached to a triglyceride. If people figure out how to make some valuable from glycerine the industry could grow to a larger scale. (e.g. a big picture book about Brazil's agriculture industry boasts that thanks to biodiesel everybody can afford high-quality soap)
(2) Ethanol from cellulosic biomass is second only to the fast breeder reactor (and maybe pyrolysis) as an energy El Dorado. You can break down cellulose into sugar with enzymes or harsh chemicals. Trouble is the enzymes cost more than the fuel is worth and it's been that way for 100 years
Are you thinking of the refining process?
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7320919/
https://en.wikipedia.org/wiki/Corn_ethanol#Greenhouse_gas_em...
Ethanol replaced MTBE, which was good (MTBE is terrible comparitively), but now it's turned into a 43 million acre per year ag subsidy program. There is no political will to remove the subsidy, due to the folks who receive these subsidies having outsized political influence, so demand destruction will be a function of EV uptake (destroying overall blended gasoline demand over time). Agrivoltaics would also be a great alternative if you could convince enough folks to buy in.
https://www.reuters.com/business/energy/bumpy-road-ahead-us-...
https://www.reuters.com/business/energy/weak-us-gasoline-dem...
https://wolfstreet.com/2024/03/07/gasoline-demand-has-a-long...
https://electrek.co/2024/03/02/1-in-5-new-car-sales-globally...
https://www.coxautoinc.com/market-insights/q2-2024-ev-sales/
https://www.energy.ca.gov/news/2024-05/zero-emission-vehicle...
Corn takes a lot of input energy. I believe that sugarcane is closer to break even as it requires less upkeep.