The only browser to implement the File System API right now is Chrome, and it obfuscates the actual files it saves on your hard drive. I don't know that we yet have a browser-based API that lets you arbitrarily access the user's disk.
I'd say that's a good thing.
Are there any other recent examples of poor permissioning?
Maybe the fact that programmers are typically more considerate about this, but it has no "real" benefit to end users, leads to the whole design/workflow not getting much attention.
Permissions on Android suck because they aren't fine-grained enough. Maybe today I want an app to have this privilege but not tomorrow. Maybe I want this feature that requires this permission, but not that feature that requires that permission. Rather than a blanket EULA-style shrink wrap grant of permissions up front.