My reading is that SpaceX was loose with their windows because it’s easier and they didn’t think it mattered in a remote part of the ocean. Now that there’s an actual reason, they’ll probably tighten it up.
Nobody is flying or sailing at Point Nemo. The keepout zone typically has a massive 1000km diameter, but approximately 0 impact on anybody.
It looks like this flight is maybe a bit south of Nemo, but in the relative vicinity.
"Santiago Chile to Sydney AUS, 2-3x a week" [0]
The one thing they can do is be sure the original trajectory that gets them to space intersects the Earth within some reason so that if things don't go as planned it doesn't go too far afield.
At best this article is a complaint about communication of whether or not a launch is happening. And even that's hard to really do reasonably: weather, maybe a stuck valve during the countdown, maybe a leisure boat close to the launch site enters the exclusion area... all of those things have happened and prompted changes in launch times and many of those things are outside of SpaceX control.
So seems to me you can lock up the airspace on a "just in case" basis with lots of advanced warning but also reserving lots of time that you won't really need in the end... you know... just in case... , or lock it up much less, but at the cost of relatively short notice to others that might want to use it. Either way you'd still get the article protesting... it's just the complaint would be different.
I also want to point out SpaceX still does a better job than some competitors (ahem, ariane, which gets a pass because it's the eurocrat's baby therefore must be good)