"(According to investigators, this altitude data was rounded to the nearest 100.)"
[...]
"At over 100 miles an hour, the helicopter could have risen to 300 feet from 200 in seconds, because of winds or other factors. Such anomalies are not unusual and can be quickly corrected."
I read your comment as implying that you've concluded it's pilot error. I don't disagree, but a good system should be robust against human error. Perhaps the permitted flight paths were too close together? I'm not an expert, but a commercial jet making a landing approach 100 feet above a helicopter doesn't seem safe or normal to me.