Actually, I don't think it was really running.
At least, judging by the photos I've seen (http://cdn-static.zdnet.com/i/story/70/00/001744/berners-lee...) the monitor was shining bright yellow, when in reality they are greyscale monitors with a bluish cast. I think the monitor was a shell, fitted with a lamp to illuminate TBL from that side.
Perhaps the keyboard was wired up to a modern laptop or tablet, or some custom system tied in with the LED system at the stadium. Most likely, it was automated for precision and correctness, and he was just miming the typing.
Which is fine, IMHO, it's good stagecraft. Voldemort and the parachuting Queen weren't real either. The rest of the light show would have been preprogrammed, so it would make sense to do the same with the message written on the LED system.
But it was definitely a Cube, NeXT keyboard, NeXT mouse, and either a modified NeXT monochrome monitor or a close facsimile. There's a lot to be said for that, given how much easier it would have been to use, say, an iPad than a full Cube system - and an iPad would be vastly more recognizable to the audience, as well.