How would this effect gut bacteria?
https://pmc.ncbi.nlm.nih.gov/articles/PMC6330042/ did mouse trials of fluoxetine and then checked the gut microbiome; they did find some changes in groups known to correlate with regulation of body mass. But, this is (a) mouse models and (b) a long string of correlations with (to my knowledge) no actual causal understanding.
https://www.hopkinsmedicine.org/health/wellness-and-preventi...
They flew under the radar all this time because they're viruses; in general, the only viruses we're aware of in humans are the ones that cause harmful symptoms because actually visualizing the little bastards requires busting out the ol' electron microscope, so if they don't give us a reason to look we aren't looking!