Abstraction can be thought of as a system of interfaces. The right abstractions can totally transform how a human or machine interpret and solve a problem. The most effective and elegant machines will still make use of abstraction above machine code.
Perspective is everything, and it's hard to have perspective of the entire system on the ground floor. Getting the priors right, or getting the LLM to first consider different grammars can greatly simplify the problem and its solution.
You can think of learning as decontextualization of input data into pure relational constructs. Application, then, is the recontextualization of some relational construct in order to apply generalized relations and insights to problems of different shapes and sizes. Understanding a concept thus means mastering the decontextualization and recontextualization of a set of relations.
Using a DSL instead of pure machine code is an example of recontextualization, and it can totally change how a model understands and processes input and what kind of output is produced.
LLMs essentially read their own code when producing it, so if they lose the abstractions then they can lose the context around what they were doing and why they were doing it. It also makes it harder for them to modify their existing code.
I could certainly believe that it's plausible that there's a low level representation that LLMs would find easier than our own languages though - but an existing IR is unlikely to be it.
Also more practically speaking, LLMs struggle to write in languages that they don't have a large training dataset for.
Less flexibility yes, but a huge improvement in usefulness and productivity.
Fyi you can do this today. Ask for a flying cape dog and have a stl you can print into a physical object.