I'm sort of tolerant of bits of Session leaking into things. I'd argue that its leaking pieces are the application-level things you'd implement, not versions of them from the lower layers that you need to wrap.
When users filter data and their filters go from POST submissions to some high-level Filter thing I'd pass to a repository query, what does that construct look like? Pretty much Query.filter(). When I pick how many things I want from the repository, it's Query.first() or Query.one(), or Query.filter().filter().filter().all().
Yes, it's tied to SQL, but only in a literal sense. The API would look like that no matter what, even if it wasn't. When the benefit outweighs the cost, I choose to treat it like it is the thing I should have written.
It isn't ideal or ideally correct, but it's fine, and it's simple.