>Specifically, the code signing information (code directory hash) is hung off the vnode within the kernel, and modifying the file behind that cache will cause problems. You need a new vnode, which means a new file, that is, a new inode. Documented in WWDC 2019 Session 703 All About Notarization - see slide 65 (PDF).
This seems to be described in https://eclecticlight.co/2024/04/29/apfs-beyond-to-vfs-and-v... but I'm just a layman here. I don't quite understand the benefits of this caching if you have to recompute them to detect mismatch anyway. [1]
And I realize now the initial gatekeeper scan is probably just controlled by presence of quarantine bit, the result themselves are probably not cached.
Edit: Now I'm not so sure, spctl has a --ignore-cache option. So the result of gatekeeper is indeed cached somehow. And presumably as you noted it's a cache miss for this which causes the long application launch delay.
[1] https://github.com/golang/go/issues/42684 has a bit more info on this, I'm happy to see that even seasoned experts are confused about these things.