Node does not have the concept of security and isolation like the Deno has. There is maintainer comment in the same thread.
It's their application, yt-dlp can use whatever it wants. But they made their choices for stylistic/aesthetic reasons.
Scripts use V8 isolation, identical to Chrome. What comes to rest, we can only trust or review by ourself, but it is certainly better than nothing in this context.
But the usage of V8 means that Deno must explicitly provide the access (for V8) for networking and filesystem - the foundations for sandboxing are there.