I think I understand the deeper point you're trying to make, which is that not all web platform capabilities are created equal when it comes to making PWAs a legitimate alternative to native apps.
I've tried to be thoughtful about this, and my solution was to weight the capabilities from 0.5–3. At the two ends of that range, I gave required PWA features a weight of 3, and nice-to-have/experimental features a weight of 0.5. As you can see, this doesn't really penalize Chrome for its "stunt features", and I think it provides a more realistic picture of what Firefox and Safari are capable of for most PWA use cases.
Additionally, experimental and non-standard features aren't used to compute the PWAscore. You can see raw scores (unweighted, and including experimental/non-standard features) in the tooltip of the "normal" score.