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The analogy they were making: "This is a commonly home-built and heavily customized hacker aircraft, just like Arch Linux is a commonly home-built and heavily customized hacker Linux distro"
Two things can be analogous in one aspect while being disanalogous in another aspect. That doesn't make the analogy invalid.
You don't make analogies out of things that are the same, that's one of the hallmarks of an analogy.