> No command injection — Timeout parameter is a Swift Int, not a string

Please don't use slop machines to write READMEs. If you're launching bioutil as a subprocess, you're passing the timeout as a string. In your code, you read the timeout, convert to int, set timeout to 1, and set it back to the previously retrieved value. There is no difference between keeping it as strings or doing a string->int->string round-trip, assuming no sizing and formatting weirdness.