I used IntelliJ IDEA for about 1 year and I never encountered a single instance in which this IDE got a rename wrong, or a "find usages" for a type. I also never got an importing wildcard to shadow some important definition that I was using from another package and in fact it bugs me that lately I can't get IntelliJ IDEA to do wildcards imports were it can, because I don't like dozens and dozens of imports from the same package.
What it does wrong is when copy/pasting code or when moving a class/trait to another file/package, it sometimes misses the imports for the implicits that the code is using. You can't really blame it, since an imported implicit is not hard-wired in the same way an explicit reference or type usage is. Depending on your perspective, this may be a feature and not a bug :-)
Either way, IntelliJ IDEA gives awesome in-editor error highlighting and you also have Scala's compiler to double-check things for you, so you really don't have to double-check the IDE's work, except in cases where there are problems.
> The Java-to-Scala tool emitted code that would never have compiled on any version of the Scala compiler.
It's pretty hard to translate from Java to Scala and you're right that it doesn't work. On the other hand, idiomatic Java code is pretty freaking far from idiomatic Scala code and I think you should either leave that Java code as is (mixed projects are easy to configure) or you should translate it in idiomatic Scala code by hand, a task that no transpiler could do.