Right now it's just a command line client, but a public API is in the works. And this week we'll be announcing a solution to the cert rotation problem (basically, you'll be able to drive your renewals from cron - it's going to be really cool). You might want to follow @sslmate on Twitter - this is just the beginning of some very exciting stuff for automating SSL cert deployment. Also feel free to email me (address is in my profile).
Sadly, we're still SHA-1 only, because that's all that our certificate authority (RapidSSL) supports at the moment. On the other hand, once we make renewals dead simple, you can just buy 1 year certs and it won't be a big deal upgrading to SHA-2 in a year's time. (After all, even Google is still using SHA-1, but they can easily switch thanks to their 3 month certs and well-oiled cert deployment machinery.)