I think you misread the article. They are not claiming to break SHA, they are claiming they can get better than bruteforce performance on mining bitcoins.
If you additionally consider how SAT solving algorithms work, they are less amenable to modern CPUs than plain bruteforce, which can take full advantage of SIMD and instruction parallelism. If you look at password hash breakers, you will see them using extra tricks, like early abort, to speed things up even further.
Our hash functions are not perfect with respect to this.