Mt. Gox had a financial control problem less complex than that faced by the typical supermarket. A supermarket has cash going in and out, multiple cash registers, multiple cashiers on different shifts, credit cards, checks, benefit cards, and automated checkout lanes. That's just the front side - there's a comparable operation at the back, where merchandise comes in and is accounted for. A big supermarket has a higher transaction rate than Mt. Gox did.
If a $10 bill goes missing in a supermarket, the management will know at the end of the day, and will probably be able to figure out where it went. This is routine cash control. It's a solved problem.
Mt. Gox had no financial controls; we know that from press reports. None. They don't even seem to have had a general ledger. This is rare in real businesses, but it's common in fraud schemes. Fraudsters don't want accounting controls, with everything they're stealing on the record.
Anyway, on Jan 3, we'll hear more. That this story came from the Tokyo Metropolitan Police is significant. The police haven't said anything until now, except that they were investigating. That silence has ended. Arrests may be announced. There's a good chance that Mark Karpeles is about to experience the standard 21-day interrogation used in Japan.