If the schedule called for simulations to be run in parallel with the live test, then it's an expected outcome. It should be _expected_ that every test will find a problem. Since this was uncrewed, there was no risk (other than to the uncompleted tests possibly requiring a second flight) to running them in parallel and porting across fixes for any problems that were found.
It was a schedule compression attempt with a cost of second test flight risk if it failed.